This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Wagner, M.
Right arrow Articles by Stahl, D. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Wagner, M.
Right arrow Articles by Stahl, D. A.

 Previous Article  |  Next Article 

J Bacteriol, June 1998, p. 2975-2982, Vol. 180, No. 11
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.

Phylogeny of Dissimilatory Sulfite Reductases Supports an Early Origin of Sulfate Respiration

Michael Wagner,1,dagger Andrew J. Roger,2 Jodi L. Flax,1 Gregory A. Brusseau,1 and David A. Stahl1,*

Department of Civil Engineering, Technological Institute, Northwestern University, Evanston, Illinois 60208-3109,1 and Marine Biological Laboratory, Woods Hole, Massachusetts 02543-10152

Received 12 January 1998/Accepted 24 March 1998

Microorganisms that use sulfate as a terminal electron acceptor for anaerobic respiration play a central role in the global sulfur cycle. Here, we report the results of comparative sequence analysis of dissimilatory sulfite reductase (DSR) genes from closely and distantly related sulfate-reducing organisms to infer the evolutionary history of DSR. A 1.9-kb DNA region encoding most of the alpha  and beta  subunits of DSR could be recovered only from organisms capable of dissimilatory sulfate reduction with a PCR primer set targeting highly conserved regions in these genes. All DNA sequences obtained were highly similar to one another (49 to 89% identity), and their inferred evolutionary relationships were nearly identical to those inferred on the basis of 16S rRNA. We conclude that the high similarity of bacterial and archaeal DSRs reflects their common origin from a conserved DSR. This ancestral DSR was either present before the split between the domains Bacteria, Archaea, and Eucarya or laterally transferred between Bacteria and Archaea soon after domain divergence. Thus, if the physiological role of the DSR was constant over time, then early ancestors of Bacteria and Archaea already possessed a key enzyme of sulfate and sulfite respiration.

* Corresponding author. Mailing address: Department of Civil Engineering, Technological Institute, Northwestern University, 2145 Sheridan Rd., Evanston, IL 60208-3109. Phone: (847) 491-4997. Fax: (847) 491-4011. E-mail: d-stahl{at}nwu.edu.

dagger Present address: Technische Universität München, Lehrstuhl für Mikrobiologie, D-80290 Munich, Germany.

J Bacteriol, June 1998, p. 2975-2982, Vol. 180, No. 11
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.


This article has been cited by other articles:

  • Oliveira, T. F., Vonrhein, C., Matias, P. M., Venceslau, S. S., Pereira, I. A. C., Archer, M. (2008). The Crystal Structure of Desulfovibrio vulgaris Dissimilatory Sulfite Reductase Bound to DsrC Provides Novel Insights into the Mechanism of Sulfate Respiration. J. Biol. Chem. 283: 34141-34149 [Abstract] [Full Text]  
  • Takii, S., Hanada, S., Hase, Y., Tamaki, H., Uyeno, Y., Sekiguchi, Y., Matsuura, K. (2008). Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids. Int. J. Syst. Evol. Microbiol. 58: 2433-2438 [Abstract] [Full Text]  
  • Villanueva, L., Haveman, S. A., Summers, Z. M., Lovley, D. R. (2008). Quantification of Desulfovibrio vulgaris Dissimilatory Sulfite Reductase Gene Expression during Electron Donor- and Electron Acceptor-Limited Growth. Appl. Environ. Microbiol. 74: 5850-5853 [Abstract] [Full Text]  
  • Hall, J. R., Mitchell, K. R., Jackson-Weaver, O., Kooser, A. S., Cron, B. R., Crossey, L. J., Takacs-Vesbach, C. D. (2008). Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes. Appl. Environ. Microbiol. 74: 4910-4922 [Abstract] [Full Text]  
  • Biddle, J. F., Fitz-Gibbon, S., Schuster, S. C., Brenchley, J. E., House, C. H. (2008). Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc. Natl. Acad. Sci. USA 105: 10583-10588 [Abstract] [Full Text]  
  • Quemeneur, M., Heinrich-Salmeron, A., Muller, D., Lievremont, D., Jauzein, M., Bertin, P. N., Garrido, F., Joulian, C. (2008). Diversity Surveys and Evolutionary Relationships of aoxB Genes in Aerobic Arsenite-Oxidizing Bacteria. Appl. Environ. Microbiol. 74: 4567-4573 [Abstract] [Full Text]  
  • Vianna, M. E., Holtgraewe, S., Seyfarth, I., Conrads, G., Horz, H. P. (2008). Quantitative Analysis of Three Hydrogenotrophic Microbial Groups, Methanogenic Archaea, Sulfate-Reducing Bacteria, and Acetogenic Bacteria, within Plaque Biofilms Associated with Human Periodontal Disease. J. Bacteriol. 190: 3779-3785 [Abstract] [Full Text]  
  • Mori, K., Maruyama, A., Urabe, T., Suzuki, K.-i., Hanada, S. (2008). Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean. Int. J. Syst. Evol. Microbiol. 58: 810-816 [Abstract] [Full Text]  
  • Edmonds, J. W., Weston, N. B., Joye, S. B., Moran, M. A. (2008). Variation in Prokaryotic Community Composition as a Function of Resource Availability in Tidal Creek Sediments. Appl. Environ. Microbiol. 74: 1836-1844 [Abstract] [Full Text]  
  • Hansel, C. M., Fendorf, S., Jardine, P. M., Francis, C. A. (2008). Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile. Appl. Environ. Microbiol. 74: 1620-1633 [Abstract] [Full Text]  
  • Meyer, B., Kuever, J. (2007). Molecular Analysis of the Diversity of Sulfate-Reducing and Sulfur-Oxidizing Prokaryotes in the Environment, Using aprA as Functional Marker Gene. Appl. Environ. Microbiol. 73: 7664-7679 [Abstract] [Full Text]  
  • Dillon, J. G., Fishbain, S., Miller, S. R., Bebout, B. M., Habicht, K. S., Webb, S. M., Stahl, D. A. (2007). High Rates of Sulfate Reduction in a Low-Sulfate Hot Spring Microbial Mat Are Driven by a Low Level of Diversity of Sulfate-Respiring Microorganisms. Appl. Environ. Microbiol. 73: 5218-5226 [Abstract] [Full Text]  
  • Foti, M., Sorokin, D. Y., Lomans, B., Mussman, M., Zacharova, E. E., Pimenov, N. V., Kuenen, J. G., Muyzer, G. (2007). Diversity, Activity, and Abundance of Sulfate-Reducing Bacteria in Saline and Hypersaline Soda Lakes. Appl. Environ. Microbiol. 73: 2093-2100 [Abstract] [Full Text]  
  • Suzuki, D., Ueki, A., Amaishi, A., Ueki, K. (2007). Desulfopila aestuarii gen. nov., sp. nov., a Gram-negative, rod-like, sulfate-reducing bacterium isolated from an estuarine sediment in Japan. Int. J. Syst. Evol. Microbiol. 57: 520-526 [Abstract] [Full Text]  
  • Dar, S. A., Yao, L., van Dongen, U., Kuenen, J. G., Muyzer, G. (2007). Analysis of Diversity and Activity of Sulfate-Reducing Bacterial Communities in Sulfidogenic Bioreactors Using 16S rRNA and dsrB Genes as Molecular Markers. Appl. Environ. Microbiol. 73: 594-604 [Abstract] [Full Text]  
  • Lloyd, K. G., Lapham, L., Teske, A. (2006). An Anaerobic Methane-Oxidizing Community of ANME-1b Archaea in Hypersaline Gulf of Mexico Sediments. Appl. Environ. Microbiol. 72: 7218-7230 [Abstract] [Full Text]  
  • Brazelton, W. J., Schrenk, M. O., Kelley, D. S., Baross, J. A. (2006). Methane- and Sulfur-Metabolizing Microbial Communities Dominate the Lost City Hydrothermal Field Ecosystem. Appl. Environ. Microbiol. 72: 6257-6270 [Abstract] [Full Text]  
  • Vianna, M. E., Conrads, G., Gomes, B. P. F. A., Horz, H. P. (2006). Identification and Quantification of Archaea Involved in Primary Endodontic Infections. J. Clin. Microbiol. 44: 1274-1282 [Abstract] [Full Text]  
  • Moser, D. P., Gihring, T. M., Brockman, F. J., Fredrickson, J. K., Balkwill, D. L., Dollhopf, M. E., Lollar, B. S., Pratt, L. M., Boice, E., Southam, G., Wanger, G., Baker, B. J., Pfiffner, S. M., Lin, L.-H., Onstott, T. C. (2005). Desulfotomaculum and Methanobacterium spp. Dominate a 4- to 5-Kilometer-Deep Fault. Appl. Environ. Microbiol. 71: 8773-8783 [Abstract] [Full Text]  
  • Mussmann, M., Richter, M., Lombardot, T., Meyerdierks, A., Kuever, J., Kube, M., Glockner, F. O., Amann, R. (2005). Clustered Genes Related to Sulfate Respiration in Uncultured Prokaryotes Support the Theory of Their Concomitant Horizontal Transfer. J. Bacteriol. 187: 7126-7137 [Abstract] [Full Text]  
  • Karr, E. A., Sattley, W. M., Rice, M. R., Jung, D. O., Madigan, M. T., Achenbach, L. A. (2005). Diversity and Distribution of Sulfate-Reducing Bacteria in Permanently Frozen Lake Fryxell, McMurdo Dry Valleys, Antarctica. Appl. Environ. Microbiol. 71: 6353-6359 [Abstract] [Full Text]  
  • Castro, H., Newman, S., Reddy, K. R., Ogram, A. (2005). Distribution and Stability of Sulfate-Reducing Prokaryotic and Hydrogenotrophic Methanogenic Assemblages in Nutrient-Impacted Regions of the Florida Everglades. Appl. Environ. Microbiol. 71: 2695-2704 [Abstract] [Full Text]  
  • Suzuki, Y., Kelly, S. D., Kemner, K. M., Banfield, J. F. (2005). Direct Microbial Reduction and Subsequent Preservation of Uranium in Natural Near-Surface Sediment. Appl. Environ. Microbiol. 71: 1790-1797 [Abstract] [Full Text]  
  • Zverlov, V., Klein, M., Lucker, S., Friedrich, M. W., Kellermann, J., Stahl, D. A., Loy, A., Wagner, M. (2005). Lateral Gene Transfer of Dissimilatory (Bi)Sulfite Reductase Revisited. J. Bacteriol. 187: 2203-2208 [Abstract] [Full Text]  
  • Perez-Jimenez, J. R., Kerkhof, L. J. (2005). Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB). Appl. Environ. Microbiol. 71: 1004-1011 [Abstract] [Full Text]  
  • Loy, A., Kusel, K., Lehner, A., Drake, H. L., Wagner, M. (2004). Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages. Appl. Environ. Microbiol. 70: 6998-7009 [Abstract] [Full Text]  
  • Chin, K.-J., Esteve-Nunez, A., Leang, C., Lovley, D. R. (2004). Direct Correlation between Rates of Anaerobic Respiration and Levels of mRNA for Key Respiratory Genes in Geobacter sulfurreducens. Appl. Environ. Microbiol. 70: 5183-5189 [Abstract] [Full Text]  
  • Moreau, J. W., Webb, R. I., Banfield, J. F. (2004). Ultrastructure, aggregation-state, and crystal growth of biogenic nanocrystalline sphalerite and wurtzite. American Mineralogist 89: 950-960 [Abstract] [Full Text]  
  • Abildgaard, L., Ramsing, N. B., Finster, K. (2004). Characterization of the marine propionate-degrading, sulfate-reducing bacterium Desulfofaba fastidiosa sp. nov. and reclassification of Desulfomusa hansenii as Desulfofaba hansenii comb. nov.. Int. J. Syst. Evol. Microbiol. 54: 393-399 [Abstract] [Full Text]  
  • Cravo-Laureau, C., Matheron, R., Cayol, J.-L., Joulian, C., Hirschler-Rea, A. (2004). Desulfatibacillum aliphaticivorans gen. nov., sp. nov., an n-alkane- and n-alkene-degrading, sulfate-reducing bacterium. Int. J. Syst. Evol. Microbiol. 54: 77-83 [Abstract] [Full Text]  
  • Nakagawa, T., Ishibashi, J.-I., Maruyama, A., Yamanaka, T., Morimoto, Y., Kimura, H., Urabe, T., Fukui, M. (2004). Analysis of Dissimilatory Sulfite Reductase and 16S rRNA Gene Fragments from Deep-Sea Hydrothermal Sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific. Appl. Environ. Microbiol. 70: 393-403 [Abstract] [Full Text]  
  • Nakagawa, T., Fukui, M. (2003). Molecular Characterization of Community Structures and Sulfur Metabolism within Microbial Streamers in Japanese Hot Springs. Appl. Environ. Microbiol. 69: 7044-7057 [Abstract] [Full Text]  
  • Liu, X., Bagwell, C. E., Wu, L., Devol, A. H., Zhou, J. (2003). Molecular Diversity of Sulfate-Reducing Bacteria from Two Different Continental Margin Habitats. Appl. Environ. Microbiol. 69: 6073-6081 [Abstract] [Full Text]  
  • Elshahed, M. S., Senko, J. M., Najar, F. Z., Kenton, S. M., Roe, B. A., Dewers, T. A., Spear, J. R., Krumholz, L. R. (2003). Bacterial Diversity and Sulfur Cycling in a Mesophilic Sulfide-Rich Spring. Appl. Environ. Microbiol. 69: 5609-5621 [Abstract] [Full Text]  
  • Audiffrin, C., Cayol, J.-L., Joulian, C., Casalot, L., Thomas, P., Garcia, J.-L., Ollivier, B. (2003). Desulfonauticus submarinus gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 53: 1585-1590 [Abstract] [Full Text]  
  • Fishbain, S., Dillon, J. G., Gough, H. L., Stahl, D. A. (2003). Linkage of High Rates of Sulfate Reduction in Yellowstone Hot Springs to Unique Sequence Types in the Dissimilatory Sulfate Respiration Pathway. Appl. Environ. Microbiol. 69: 3663-3667 [Abstract] [Full Text]  
  • Dhillon, A., Teske, A., Dillon, J., Stahl, D. A., Sogin, M. L. (2003). Molecular Characterization of Sulfate-Reducing Bacteria in the Guaymas Basin. Appl. Environ. Microbiol. 69: 2765-2772 [Abstract] [Full Text]  
  • Teske, A., Dhillon, A., Sogin, M. L. (2003). Genomic Markers of Ancient Anaerobic Microbial Pathways: Sulfate Reduction, Methanogenesis, and Methane Oxidation. Biol. Bull. 204: 186-191 [Abstract] [Full Text]  
  • Castro, H., Reddy, K. R., Ogram, A. (2002). Composition and Function of Sulfate-Reducing Prokaryotes in Eutrophic and Pristine Areas of the Florida Everglades. Appl. Environ. Microbiol. 68: 6129-6137 [Abstract] [Full Text]  
  • Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K.-H., Wagner, M. (2002). Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment. Appl. Environ. Microbiol. 68: 5064-5081 [Abstract] [Full Text]  
  • Ito, T., Nielsen, J. L., Okabe, S., Watanabe, Y., Nielsen, P. H. (2002). Phylogenetic Identification and Substrate Uptake Patterns of Sulfate-Reducing Bacteria Inhabiting an Oxic-Anoxic Sewer Biofilm Determined by Combining Microautoradiography and Fluorescent In Situ Hybridization. Appl. Environ. Microbiol. 68: 356-364 [Abstract] [Full Text]  
  • Friedrich, M. W. (2002). Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5'-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms. J. Bacteriol. 184: 278-289 [Abstract] [Full Text]  
  • Hristova, K. R., Lutenegger, C. M., Scow, K. M. (2001). Detection and Quantification of Methyl tert-Butyl Ether-Degrading Strain PM1 by Real-Time TaqMan PCR. Appl. Environ. Microbiol. 67: 5154-5160 [Abstract] [Full Text]  
  • Joulian, C., Ramsing, N. B., Ingvorsen, K. (2001). Congruent Phylogenies of Most Common Small-Subunit rRNA and Dissimilatory Sulfite Reductase Gene Sequences Retrieved from Estuarine Sediments. Appl. Environ. Microbiol. 67: 3314-3318 [Abstract] [Full Text]  
  • Chee-Sanford, J. C., Aminov, R. I., Krapac, I. J., Garrigues-Jeanjean, N., Mackie, R. I. (2001). Occurrence and Diversity of Tetracycline Resistance Genes in Lagoons and Groundwater Underlying Two Swine Production Facilities. Appl. Environ. Microbiol. 67: 1494-1502 [Abstract] [Full Text]  
  • Thomsen, T. R., Finster, K., Ramsing, N. B. (2001). Biogeochemical and Molecular Signatures of Anaerobic Methane Oxidation in a Marine Sediment. Appl. Environ. Microbiol. 67: 1646-1656 [Abstract] [Full Text]  
  • Laue, H., Friedrich, M., Ruff, J., Cook, A. M. (2001). Dissimilatory Sulfite Reductase (Desulfoviridin) of the Taurine-Degrading, Non-Sulfate-Reducing Bacterium Bilophila wadsworthia RZATAU Contains a Fused DsrB-DsrD Subunit. J. Bacteriol. 183: 1727-1733 [Abstract] [Full Text]  
  • Detmers, J., Brüchert, V., Habicht, K. S., Kuever, J. (2001). Diversity of Sulfur Isotope Fractionations by Sulfate-Reducing Prokaryotes. Appl. Environ. Microbiol. 67: 888-894 [Abstract] [Full Text]  
  • Davey, M. E., O'toole, G. A. (2000). Microbial Biofilms: from Ecology to Molecular Genetics. Microbiol. Mol. Biol. Rev. 64: 847-867 [Abstract] [Full Text]  
  • Schramm, A., Santegoeds, C. M., Nielsen, H. K., Ploug, H., Wagner, M., Pribyl, M., Wanner, J., Amann, R., de Beer, D. (1999). On the Occurrence of Anoxic Microniches, Denitrification, and Sulfate Reduction in Aerated Activated Sludge. Appl. Environ. Microbiol. 65: 4189-4196 [Abstract] [Full Text]  
  • Cottrell, M. T., Cary, S. C. (1999). Diversity of Dissimilatory Bisulfite Reductase Genes of Bacteria Associated with the Deep-Sea Hydrothermal Vent Polychaete Annelid Alvinella pompejana. Appl. Environ. Microbiol. 65: 1127-1132 [Abstract] [Full Text]  
  • Fritz, G., Roth, A., Schiffer, A., Buchert, T., Bourenkov, G., Bartunik, H. D., Huber, H., Stetter, K. O., Kroneck, P. M. H., Ermler, U. (2002). Structure of adenylylsulfate reductase from the hyperthermophilic Archaeoglobus fulgidus at 1.6-A resolution. Proc. Natl. Acad. Sci. USA 99: 1836-1841 [Abstract] [Full Text]  


Copyright © 2009 by the American Society for Microbiology.   For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»